papers list
VCAD Modeling Team
  1. X. Luo, Z. Gu, K. Lei, S. Wang, and K. Kase,
    "A finite volume method for solving the Navier-Stokes equations on three dimensionalCartesian cut cells"
    International Journal for Numerical Methods in Fluids (to appear).

  2. Z. Gu, Y. Zang, and K. Lei,
    "Large eddy simulation of flow in a street canyon with tree planting under various atmospheric instabilityconditions"
    Science China Technological Sciences 53(7) pp.1928-1937 (2010).

  3. N. Imai, T. Nagashima, and K. Kase,
    "Crack Propagation Simulator V-X3D Based on VCAD Framework"
    IOP Conference Series: Materials Science and Engineering 10(12053) pp.1-8 (2010).

  4. X. Luo, K. Lei, Z. Gu, S.Wang, and K. Kase,
    "A novel Cartesian cut cell solver for incompressible viscous flow in irregular domains"
    International Journal for Numerical Methods in Fluids (DOI: 10.1002/fld.2347) (2010).

  5. L. Lu, Z. Gu, K. Lei, S. Wang, and K. Kase,
    "An efficient algorithm for detecting particle  contact in non-uniform size particulatesystem"
    Particuology 8(2) pp.127-132 (2010).

  6. X. Luo, Z. Gu, K. Lei, and K. Kase,
    "A Novel Discretization method for the Incompressible N-S Equations on ThreedimensionalCartesian Cut Cell Method"
    Journal of Xi’an Jiaotong University 44(5) pp.15-20 (2010).

  7. S. Wang, K. Lei, X. Luo, Z. Gu, and K. Kase,
    "Effect of Boundary Conditions on the Performances of Gas-Lubricated Micro JournalBearing"
    IOP Conference Series: Materials Science and Engineering 10(12179) pp.1-10 (2010).

  8. S. Wang, H. Ninokata, E. Merzari, K. Lei, X. Luo, L. Lu, and K. Kase,
    "Numerical study of a single blade row in turbomolecularpump"
    Vacuum 83(8) pp.1106-1117 (2009).

  9. L. Lu, Z. Gu, and K. Lei,
    "An inter-particle contact area and time restoration for softening treatment in thermal discrete elementmodeling"
    Europhysics Letters 87(444004) pp.1-4 (2009).

  10. X. Luo, Z. Gu, K. Lei, and K. Kase,
    "An Adaptive Cartesian Grid Method for the Incompressible Navier-Stokes Equations"
    Journal of Xi’an Jiaotong University 43(11) pp.11-17 (2009).

  11. X. Luo, Z. Gu, K. Lei, S. Wang, and K. Kase,
    "Solution of N-S Equations Based on the Quadtree Cut Cell method"
    Science in China Series G: Physics Mechanics and Astronomy 52(6) pp.877-884 (2009).

  12. K. Lei, K. Kase, N. Oshima, and T. Kobayashi,
    "Solid particle distribution in particle-laden turbulent channel flows"
    Progress in Compputational Fluid Dynamics 8(7/8) pp.413-423 (2008).

  13. L. Lu, Z. Gu, X. Luo, and K. Lei,
    "An electrostatic dynamic model for wind-blown sand systems"
    Acta Physica Sinica 57(11) pp.6939-6945 (2008).

Functionality Simulation and Information Team
  1. N. Leduc, K. Okita, K. Sugiyama, S. Takagi, and Y. Matsumoto,
    "Time Reversal Induced HIFU: 3D Simulations for Focus and GratingLobes Control"
    Trans. Ultrasonics Ferroelectrics and Frequency Control (to appear).

  2. K. Okita, K. Ono, S. Takagi, and Y. Matsumoto,
    "Development of High Intensity Focused Ultrasound Simulator for Large ScaleComputing"
    Int. J. Numerical Methods in Fluids 65 pp.163-169 (2011).

  3. K. Okita, K. Ono, S. Takagi, and Y. Matsumoto,
    "Numerical Simulation of the Tissue Ablation in High Intensity Focused UltrasoundTherapy with Array Transducer"
    Int. J. Numerical Methods in Fluids 64 pp.1395-1411 (2010).

  4. Y. Morimoto and K. Ono,
    "Computer-Generated Tie-Dyeing Using a 3D Diffusion Graph"
    Lecture Notes in Computer Science 6453 pp.707-718 (2010).

  5. K. Ono and Y. Kawashima,
    "Multicolor SOR method with consecutive memory access implementation in a shared and distributedmemory parallel environment"
    Lecture Notes in Computational Science and Engineering 74 pp.183-191 (2010).

  6. G. Hashimoto and K. Ono,
    "Interface treatment under no-slip conditions using level-set virtual particles for fluid-structure interaction"
    Theoretical and Applied Mechanics Japan 58 pp.325-342 (2010).

  7. K. Ono, T. Tamaki, and H. Yoshikawa,
    "Development of a framework for parallel simulators with various physics and its performance"
    Lecture Notes in Computational Science and Engineering 67 pp.9-18 (2009).

  8. K. Okita, H. Ugajin, and Y. Matsumoto,
    "Numerical Analysis of the Influence of the Tip Clearance Flows on the Unsteady CavitatingFlows in a Three-Dimensional Inducer"
    Journal of Hydrodynamics 21(1) pp.34-40 (2009).

  9. K. Shimano, T. Kumano, M. Takagi, K. Ono, N. Horinouchi, and S. Tarumi,
    "Wind Tunnel Testing of JSAE Standard Lowaerodynamic-drag Vehicle Body Using 1/5 Scale Model"
    Review of Automotive Engineering 30(1) pp.51-60 (2009).

  10. K. Ono and J. Nonaka,
    "Design of cooperative visualization environment with intensive data management in project lifecycle"
    Ultrascale Visualization 2008. UltraVis 2008. Workshop on pp.51-61 (2008).

  11. M. Futakawa, H. Kogawa, S. Hasegawa, Y. Ikeda, B. Riemer, M. Wendel, J. Haines, G. Bauer, T. Naoe, K. Okita, A. Fujiwara, Y.Matsumoto, and N. Tanaka,
    "Cavitation damage prediction for spallation target vessels by assessment of acoustic vibration"
    Journal of Nuclear Materials 377 pp.182-188 (2008).

  12. G. Hashimoto and H. Noguchi,
    "Gas-liquid interface treatment in underwater explosion problem using moving least squares-smoothedparticle hydrodynamics"
    Interaction and Multiscale Mechanics 1(2) pp.251-278 (2008).

  13. K. Okita, S. Takagi, and Y. Matsumoto,
    "Propagation of Pressure Waves, Caused by a Thermal Shock, in Liquid Metals ContainingGas Bubbles"
    Journal of Fluid Science and Technology 3(1) pp.116-128 (2008).

  14. Y. He, M. Shirazaki, H. Liu, R. Himeno, and Z. Sun,
    "A numerical coupling model to analyze the blood flow, temperature and oxygentransport in the human breast tumor under laser irradiation"
    Computers in Biology and Medicine 36(12) pp.1336-1350 (2006).

Bio-research Infrastructure Construction Team
  1. K. Maeshima, H. Iino, S. Hihara, T. Funakoshi, A. Watanabe, M. Nishimura, R. Nakatomi, K. Yahata, F. Imamoto, T. Hashikawa,H. Yokota, and N. Imamoto,
    "Nuclear Pore Formation, but Not Nuclear Growth, is Governed by Cyclin-dependent Kinases (Cdks)During Interphase in Human Dividing Cells"
    Nature Structural & Molecular Biology (to appear).

  2. S. Yoshizawa, S. Takemoto, M. Takahashi, M. Muroi, S. Kazami, H. Miyoshi, and H. Yokota,
    "Interactive Registration of IntracellularVolumes with Radial Basis Functions"
    International Journal of Computational Intelligence and Applications (to appear).

  3. T. Ijiri and H. Yokota,
    "Contour-based Interface for Refining Volume Segmentation"
    Computer Graphics Forum 29(7) pp.2153-2160 (2011).

  4. Yukie Nagai, Yutaka Ohtake, Hiromasa Suzuki, and Hideo Yokota
    "Outlier/Noise-Robust Partition of Unity Implicit Surface"
    Reconstruction Geometric Computing Workshop on Asian Conference on Design and Digital Engineering, GC-2-3, (Jeju, Korea, 25--28 August, 2010), pp. 454-460, 2010

  5. Shin Yoshizawa, Alexander Belyaev, and Hideo Yokota
    "Feature-Preserving Filters for Biomedical Image Denoising and Clustering"
    Int. Conf. on Systems Biology, poster, CD: pp. a189, October 10-14, 2010, Edinburgh, UK

  6. Satoko Takemoto, Shin Yoshizawa, and Hideo Yokota
    "A Performance Prediction System for Automatic Intracellular Image Quantization"
    Int. Conf. on Systems Biology, poster, CD: pp. a194, October 10-14, 2010, Edinburgh, UK

  7. T. Koyama, N. Honda, S. Yoshizawa, Y. Sunaga, S. Noda, S. Ishii, and H. Yokota
    "Cell Simulations with Complex 3D Shapes"
    Int. Conf. on Systems Biology, poster, CD: pp. a210, October 10-14, 2010, Edinburgh, UK

  8. Y. Sunaga, S. Yoshizawa, S. Noda, T. Koyama, Y. Tsujimura, and H. Yokota
    "A novel simulation platform for cell biochemical reactions, diffusions, and membrane functions"
    Int. Conf. on Systems Biology, poster, CD: pp. a161, October 10-14, 2010, Edinburgh, UK

  9. Maeshima K, Iino H, Hihara S, Funakoshi T, Watanabe A, Nishimura M, Nakatomi R, Yahata K, Imamoto F, Hashikawa T, Yokota H, and Imamoto N
    "Nuclear Pore Formation, but Not Nuclear Growth, is Governed by Cyclin-dependent Kinases (Cdks) During Interphase in Human Dividing Cells"
    Nature Structural & Molecular Biology

  10. Yoshizawa S, Belyaev A, Yokota H
    "Curvature Extremalities for Intelligent Shape and Image Interrogation"
    accepted to Proceedings of International Conference on Geometry and Graphics. (2010)

  11. Takemoto S, Yokota H
    "A region-similarity-based algorithm selection for intracellular image segmentation"
    accepted to book chapter in the book "Image Segmentation" , Intech, Vienna, Austria. (2010)

  12. Yoshizawa S, Takemoto S, Takahashi M, Muroi M, Kazami S, Miyoshi H, Yokota H
    "Interactive Registration of Intracellular Volumes with Radial Basis Functions"
    accepted to International Journal of Computational Intelligence and Applications. (2010)

  13. J. Nakanishi, Y. Kikuchi, Y. Tsujimura, H. Nakayama, S. Kaneko, T. Shimizu, K. Yamaguchi, H. Yokota, Y. Yoshida, T. Takarada, M. Maeda, and Y. Horiike
    "Precise patterning of photoactivatable glass coverslip for fluorescence observation of shape-controlled cells"
    Supramolecular Chemistry, Vol.22(7), pp. 396-405, 2010

  14. S. Yoshizawa, A. Belyaev, and H. Yokota
    "Fast Gauss Bilateral Filtering"
    Computer Graphics Forum: The International Journal of Eurographics Association, Vol.29(1), pp. 60-74, 2010

  15. K. Fujisaki, H.Yokota, H. Nakatsuchi, Y. Yamagata, T. Nishikawa, T. Udagawa and A. Makinouchi
    "Observation of three-dimensional internal structure of steel materials by means of serial sectioning with ultrasonic elliptical vibration cutting"
    Journal of Microscopy, vol.237, 1, pp.89-95, (2010)

  16. K. Fujisaki, H.Yokota, H. Nakatsuchi, Y. Yamagata, T. Nishikawa, T. Udagawa, and A. Makinouchi,
    "Observation of three-dimensionalinternal structure of steel materials by means of serial sectioning with ultrasonic elliptical vibration cutting"
    Journal of Microscopy 237(1) pp.89-95 (2010).

  17. Junpei Kimura, Nobunori Kakusho, Kenji Yamazawa, Yuuko Hirano, Yasuo Nambo, Hideo Yokota, Ryutaro Himeno
    "Stereolithographic biomodeling of equine ovary based on 3D serial digitizing device"
    Journal of veterinary science, Vol.10, No.2, pp.161-163 (2009.Jun)

  18. H.Yokota, K. Fujisaki, N. Furushiro, Y. Yamagata and N. Yamashita
    "Three-dimensional internal structure observation for industrial materials by means of high precision serial sectioning system"
    Symposium on Processing and Fabrication of Advanced Materials 18 (PFAM X), Sendai, (2009.12)

  19. Shin Yoshizawa, Satoko Takemoto, Miwa Takahashi, Makoto Muroi, Sayaka Kazami, Hiromi Miyoshi, and Hideo Yokota
    "Intracellular Volume Registration"
    International Conference on Intelligent Systems Design and Applications, pp. 1407-1412, November 30-December 2, 2009, Pisa, Italy

  20. Satoko Takemoto and Hideo Yokota
    "Algorithm selection for Intracellular Image Segmentation based on Region Similarity"
    International Conference on Intelligent Systems Design and Applications, pp. 1413-1418, November 30-December 2, 2009, Pisa, Italy

  21. Satoko Takemoto, Hideo Yokota
    "Parallelized Performance of Image Segmentation Algorithm by using the Linux Cluster on RICC"
    Super Computing 2009, Poster Presentation, November 14-20, 2009, Portland, Oregon, USA

  22. Kazuhiro Fujisaki, Hideo Yokota, Naomichi Furushiro, Yutaka Yamagata, Takashi Taniguchi, Ryutaro Himeno, Akitake Makinouchi, Toshiro Higuchi
    "Development of ultra-fine-grain binderless cBN tool for precision cutting of ferrous materials"
    Journal of Materials Processing Technology, vol.209, 15-16, pp.5646-5652, (2009)

  23. Satoko Takemoto, Hideo Yokota, Taketoshi Mishima and Ryutaro Himeno
    "Segmentation of Anatomical Structure by Using a Local Classifier Derived from Neighborhood Information"
    Human-Computer Systems Interaction, Series: Advances in Intelligent and Soft Computing, Vol. 60, pp.171-180, Springer-Verlag, Berlin Heidelberg, 2009

  24. T. Ijiri, K. Takayama, H. Yokota, and T. Igarashi
    "ProcDef: Local-to-global Deformation for Skeleton-free Character Animation"
    Computer Graphics Forum: The International Journal of Eurographics Association (Proc. of Pacific Graphics), Vol.28(7), pp. 1821-1828, 2009

  25. K. Fujisaki, H. Yokota, N. Furushiro, Y. Yamagata, T. Taniguchi, R. Himeno, A. Makinouchi, and T. Higuchi,
    "Development of ultrafine-grain binderless cBN tool for precision cutting of ferrous materials"
    Journal of Materials Processing Technology 209(15-16) pp.5646-5652 (2009).

  26. S. Takemoto, H. Yokota, T. Mishima, and R. Himeno,
    "Segmentation of Anatomical Structure by Using a Local Classifier Derivedfrom Neighborhood Information"
    Human-Computer Systems Interaction Series: Advances in Intelligent and Soft Computing 60 pp.171-180 (2009).

  27. J. Kimura, N. Kakusho, K. Yamazawa, Y. Hirano, Y. Nambo, H. Yokota, and R. Himeno,
    "Stereolithographic biomodeling of equineovary based on 3D serial digitizing device"
    Journal of Veterinary Science 10(2) pp.161-163 (2009).

  28. Soichiro Morishita, Hideo Yokota, Hajime Asama, Ryutaro Himeno and Taketoshi Mishima
    "Compensation method for quantitative observation of multicolor fluorescence with nonlinear mapping"
    Proceedings of SPIE, Mathematics of Data/Image Pattern Recognition, Compression, and Encryption with Applications, pp. 70750J-1-70750J-10, San Diego, CA, USA, Aug., 2008

  29. He Y, Liu H, Himeno R, Sunaga J, Kakusho N, Yokota H
    "Finite element analysis of blood flow and heat transfer in an image-based human finger"
    Comput. Biol. Med. 2008 May;38(5):555-562

  30. Mayoran Rajendra, Akio Yamamoto, Toshiaki Oda, Hiroyuki Kataoka, Hideo Yokota, Ryutaro Himeno, Toshiro Higuchi
    "Motion generation in MR environment using electrostatic film motor for motion-triggered cine-MRI"
    IEEE/ASME Transactions on Mechatronics, Vol.13, No.2, PP.278-285, (2008)

  31. Sera T, Yokota H, Fujisaki K, Fukasaku K, Tachibana H, Uesugi K, Yagi N, Himeno R
    "Development of high-resolution 4D in vivo-CT for visualization of cardiac and respiratory deformations of small animals"
    Phys Med Biol. 2008 Aug 21;53(16):4285-4301

  32. Shin Yoshizawa, Alexander G. Belyaev, Hideo Yokota, and Hans-Peter Seidel
    "Fast, Robust, and Faithful Methods for Detecting Crest Lines on Meshes"
    Computer Aided Geometric Design (CAGD), Vol. 25, Issue 8, pp. 545-560, 2008

  33. Kenji Yamazawa, Masahiro Anzai, Hideo Yokota, Ryutaro Himeno, Hiroshi Suzuki, Hiroyuki Narahara, Shigeki Suzuki
    "Trial formation of artificial bone by inkjet powder-layered manufacturing"
    International Jurnal of Automation Technology, Vol.2, No.3, pp.156-161, (2008)

  34. Hideo Yokota, Ryutaro Himeno, Klaus-Peter Lesch, Yoshihide Hayashizaki
    "Expression analysis for inverted effects of serotonin, transporter inactivation"
    Biochemical and Biophysical Research Communications, 368, pp.43?49, (2008)

  35. H.Yokota, N.Kakusho, K.Mekada, A.Murakami, S.Nakamura, M.Ito, K.Kase, S.Oota, K.Fukami, H.Masuya, S.Wakana, K.Moriwaki, T.Shiroishi, R.Himeno, O.Obata, and A.Yoshiki
    "High-Resolution full color digital mouse anatomy by three-dimensional internal structure microscopy"
    21st International Mammalian Genome Conference(2008),140

  36. M. Rajendra, A. Yamamoto, T. Oda, H. Kataoka, H. Yokota, R. Himeno, and T. Higuchi,
    "Motion generation in MR environmentusing electrostatic film motor for motion-triggered cine-MRI"
    IEEE/ASME Transactions on Mechatronics 13(2) pp.278-285 (2008).

  37. T. Sera, H. Yokota, K. Fujisaki, K. Fukasaku, H. Tachibana, K. Uesugi, N. Yagi, and R. Himeno,
    "Development of high-resolution 4Din vivo-CT for visualization of cardiac and respiratory deformations of small animals"
    Phys Med Biol. 53(16) pp.4285-4301 (2008).

  38. K. Yamazawa, M. Anzai, H. Yokota, R. Himeno, H. Suzuki, H. Narahara, and S. Suzuki,
    "Trial formation of artificial bone by inkjetpowder-layered manufacturing"
    International Jurnal of Automation Technology 2(3) pp.156-161 (2008).

  39. M. Ichikawa, Y. Okamura-Oho, K. Shimokawa, S. Kondo, S. Nakamura, H. Yokota, R. Himeno, K.-P. Lesch, and Y. Hayashizaki,
    "Expression analysis for inverted effects of serotonin transporter inactivation"
    Biochemical and Biophysical Research Communications 368 pp.43-49 (2008).

  40. Kazuhiro Fujisaki, Hideo Yokota, Naomichi Furushiro, Shintaro Komatani, Sumito Ohzawa, Yoshimichi Sato, Ryutaro Himeno, Toshiro Higuchi, and Akitake Makinouchi
    "Three-dimensional Microscopic Elemental Analyses based on X-ray Fluorescence Analysis combined with NC High-precision Machining Process"
    19th International Congress on X-Ray Optics and Microanalysis (ICXOM 2007) Book of Abstracts , p. 143 (2007/9)

  41. Mayoran Rajendra, Akio Yamamoto, Hiroyuki Kataoka, Toshiaki Oda, Hideo Yokota, Yuki Hirano, Ryutaro Himeno, Toshiro Higuchi
    "Application of an Electrostatic Film Motor in MRI-related Biomechanical Measurement"
    Mechanical Engineering Congress, 2007 Japan (MECJ-07) , Vol. 5 , pp. 257-258 (2007/9)

  42. Akio Yamamoto, Mayoran Rajendra, Yuki Hirano, Hiroyuki Kataoka, Hideo Yokota, Ryutaro Himeno, Toshiro Higuchi
    "Motion Generation in MRI Using an Electrostatic Linear Motor for Visualizing Internal Deformation of Soft Objects by tagged cine-MRI"
    Proceedings, 2007 IEEE International Symposium on Industrial Electronics , pp. 2741-2746 (2007/6)

  43. Mayoran Rajendra, Akio Yamamoto, Toshiaki Oda, Hiroyuki Kataoka, Hideo Yokota, Yuki Hirano, Ryutaro Himeno, Toshiro Higuchi
    "Electrostatic Linear Actuation System for Motion Generation Inside MRI to Visualize Internal Deformation of Biological Objects"
    (ISMRM) SMRT 16th Annual Meeting Syllabus , p. 319 (2007/5)

  44. Mayoran Rajendra, Akio Yamamoto, Toshiaki Oda, Hideo Yokota, Ryutaro Himeno, Toshiro Higuchi
    "Application of Force Sensor made of Shielded Strain Gauges in MR-related Biomechanical Measurements"
    Proceedings, 8th Conference of System Intergration section (SI2007) , Vol. SY0012/07/0000 , pp. 1069-1070 (2007/12)

  45. Shin Yoshizawa, Alexander G. Belyaev, Hideo Yokota, and Hans-Peter Seidel
    "Fast and Faithful Geometric Algorithm for Detecting Crest Lines on Meshes"
    Pacific Graphics, pp. 231-237, October 29-November 2, 2007, Maui, Hawaii

  46. Hideo YOKOTA
    "Elucidation of life phenomenon using a simulation and imaging ?Expectation for atomic technology-"
    Second International Symposium on Atomic Technology(ISAT2),(2007 Awaji)

  47. Yasuhiro Endo, Jiro Sakamoto, Yuki Kashiwano, Hideo Yokota, Sakiko Nakamura, Juhati Oda
    "A biomechanical study on burst mechanism of impatiens pericarps"
    5th Plant biomechanics conference, pp.555-560,(2006)

  48. Hideo YOKOTA, Masaomi NISHIMURA, Kazuaki FUKASAKU, Shigeho NODA, Hiroyuki SHIMAI, Sakiko NAKMURA, Ryutarou HIMENO, Akitake MAKINOUCHI
    "Construction of Integrated Mechanical Simulation Model of Whole Body for Alive Human"
    the World Congress on Medical Physics and Biomedical Engineering 2006(WC2006)

  49. Hideo YOKOTA, Sakiko NAKAMURA, Ryutarou HIMENO
    "Digitization of the internal structure of a biological sample using a 3-dimensional internal structure"
    The 16th International Microscopy Congress(IMC16),(2006)

Manufacturing Process Simulation Team
  1. T. Hama and H. Takuda,
    "Crystal-plasticity finite-element analysis of inelastic behavior during unloading in a magnesium alloy sheet"
    International Journal of Plasticity (to appear).

  2. T. Nagata,
    "Smooth Local Interpolation of Surfaces Using Normal Vectors"
    Journal of Applied Mathematics 2010 pp.1-24 (2010).

  3. T. Hama, E. Isogai, T. Yoshida, and H. Takuda,
    "Experimental verification of springback simulation using local interpolation for toolsurfaces"
    Steel Research International 81(9) pp.753-756 (2010).

  4. K. Ohura, C. Teodosiu, and A. Makinouchi,
    "Effects of heat transfer model between cast and mold and of the constitutive law insolidification simulation coupled with thermal contraction"
    Journal of Japan Foundry Engineering Society 81 pp.323-330 (2009).

  5. N. Esmaeili, J. L. Alves, and C. Teodosiu,
    "Mechanical modeling and finite element analysis of porous cast products"
    Journal of the Japan Society for Precision Engineering 74 pp.1273-1277 (2008).

  6. T. Hama, K. Iguchi, H. Hishida, and H. Takuda,
    "Roll forming simulations of a steel sheet using various finite element method codes"
    Steel Research International 79 pp.587-594 (2008).

  7. M. Banu, T. Hama, J. L. Alves, and O. Naidim,
    "Numerical prediction of the stress fields in a bending unbending forming stage usingSTAMP3D and DD3IMP"
    Steel Research International 79 pp.186-193 (2008).

  8. T. Hama, M. Takamura, A. Makinouchi, C. Teodosiu, and H. Takuda,
    "Formulation of contact problems in sheet metal formingsimulation using local interpolation for tool surfaces"
    Journal of Computational Science and Technology 2(1) pp.68-80 (2008).

  9. T. Hama, T. Nagata, C. Teodosiu, A. Makinouchi, and H. Takuda,
    "Finite-element simulation of springback in sheet metal formingusing local interpolation for tool surfaces"
    International Journal of Mechanical Sciences 50 pp.175-192 (2008).

  10. K. Ohura, C. Teodosiu, and A. Makinouchi,
    "Solidification simulation with consideration of local variation of heat transfer coefficientcaused by air-gap generation"
    Journal of Japan Foundry Engineering Society 79 pp.656-664 (2007).

  11. T. Hama, M. Takamura, C. Teodosiu, A. Makinouchi, and H. Takuda,
    "Effect of tool modeling accuracy on sheet metal formingsimulation"
    Key Engineering Materials 340-341 pp.743-748 (2007).

  12. K. Ohura, Z. Sun, A. Makinouchi, and C. Teodosiu,
    "Volume-CAD: An integrated environment for virtual manufacturing and structuralanalysis"
    Advanced Materials Research 23 pp.17-24 (2007).

  13. T. Hama, T. Hatakeyama, M. Asakawa, H. Amino, A. Makinouchi, H. Fujimoto, and H. Takuda,
    "Finite-element simulation of theelliptical cup deep drawing process by sheet hydroforming"
    Finite Elements in Analysis and Design 43 pp.234-246 (2007).

  14. M. Banu, A. Epureanu, and T. Hama,
    "Algorithm for springback prediction of the automotive body cars based on the knowledge anddecision-making process"
    The Annals of Dunarea de Jos University 5 pp.117-124 (2007).

  15. H. Haddadi, S. Bouvier, M. Banu, C. Maier, and C. Teodosiu,
    "Towards an accurate description of the anisotropic behavior of sheetmetals under large plastic deformations: Modeling, numerical analysis and identification"
    International Journal of Plasticity 22 pp.2226-2271 (2006).

  16. T. Hama, T. Ohkubo, K. Kurisu, H. Fujimoto, and H. Takuda,
    "Formability of tube hydroforming under various loading paths"
    Journal of Materials Processing Technology 177 pp.676-679 (2006).

  17. M. Banu, M. Takamura, T. Hama, O. Naidim, C. Teodosiu, and A. Makinouchi,
    "Simulation of springback and wrinkling in stampingof a dual-phase steel rail-shaped part"
    Journal of Materials Processing Technology 173(2) pp.178-184 (2006).

VCAD Applied Fabrication Team
  1. B. Lee, A. Tajima, J. Kim, Y. Yamagata, and T. Nagamune,
    "Fabrication of Protein Microarrays Using the Electrospray Deposition(ESD) Method: Application of Microfluidic Chips in Immunoassay"
    Biotechnology and Bioprocess Engineering 15(1) pp.145-151 (2010).

  2. S. Morita, Y. Nishidate, T. Nagata, Y. Yamagata, and C. Teodosiu,
    "Ray-tracing simulation method using piecewise quadratic interpolantfor aspheric optical systems"
    Applied Optics 49(18) pp.3442-3451 (2010).

  3. L. T. de Jonge, J. Ju, S. C.G. Leeuwenburgh, Y. Yamagata, T. Higuchi, J. G. C. Wolke, K. Inoue, and J. A. Jansen,
    "A comparativestudy of two advanced spraying techniques for the deposition of biologically active enzyme coatings onto bone-substituting implants"
    Thin Solid Films 518(19) pp.5615-5621 (2010).

  4. V. Adam, H. Mizuno, A. Grichine, J. Hotta, Y. Yamagata, B. Moeyaert, U. G. Nienhaus, A. Miyawaki, D. Bourgeoisi, and J. Hofkens,
    "Data storage based on photochromic and photoconvertible fluorescent proteins"
    Journal of Biotechnology 149 pp.289-298 (2010).

  5. Y. Yamagata,
    "Surface Acoustic Wave Atomizer and Electrostatic Deposition"
    Advances in Biochemical Engineering/Biotechnology 119 pp.101-114 (2010).

  6. Y. Liu, W. Chang, and Y. Yamagata,
    "A study on optimal compensation cutting for an aspheric surface using the Taguchi method"
    CIRP Journal of Manufacturing Science and Technology 3 pp.40-48 (2010).

  7. J. Guo, H. Ohmori, K. Katahira, and Y. Uehara,
    "Comparative Study on the Materials Removal Mechanism of Ceramics and Steels"
    Key Engineering Materials 389-390 pp.18-23 (2009).

  8. J. Ju, Y. Yamagata, and T. Higuchi,
    "Thin-Film Fabrication Method for Organic Light-Emitting Diodes Using Electrospray Deposition"
    Advanced Materials 21(43) pp.4343-4347 (2009).

  9. J. Ju, Y. Yamagata, H. Ohmori, and T. Higuchi,
    "High-frequency surface acoustic wave atomizer"
    Sensors and Actuators A: Physical 145-146 pp.437-441 (2008).

  10. J. Guo, H. Ohmori, S. Morita, Y.Watanabe, Y. Uehara, K. Ikeda, and H. Shimizu,
    "Fine ELID Grinding on the Symmetric ParaboloidalMirror of Quartz"
    Key Engineering Materials 339 pp.11-15 (2007).

  11. W. Lin, H. Ohmori, T. Suzuki, Y. Uehara, Y. Watanabe, and S. Morita,
    "Characteristics of Free Form Finishing applying V-CAMSystem"
    Key Engineering Materials 329 pp.273-278 (2007).

  12. H. Ohmori, K. Katahira, T. Naruse, Y. Uehara, A. Nakao, and M. Mizutani,
    "Microscopic Grinding Effects on Fabrication of Ultra-fineMicro Tools"
    CIRP Annals: Manufacturing Technology 56(1) pp.569-572 (2007).

Computational Cell Biomechanics Team
  1. H. Kamioka and T. Adachi,
    "Application of bioimaging to osteocyte biology"
    Clinical Reviews in Bone and Mineral Metabolism (to appear).

  2. Y. Inoue and T. Adachi,
    "Coarse-grained Brownian ratchet model of membrane protrusion on cellular scale"
    Biomechanics and Modeling in Mechanobiology (to appear).

  3. H. Yamaoka and T. Adachi,
    "Continuum dynamics on a vector bundle for a directed medium"
    Journal of Physics A: Mathematical and Theoretical 43(32) pp.325209-1-15 (2010).

  4. H. Yamaoka and T. Adachi,
    "Coupling between axial stretch and bending/twisting deformation of actin filaments caused by a mismatchedcentroid from the center axis"
    International Journal of Mechanical Sciences 52(2) pp.329-333 (2010).

  5. D. Tawara, J. Sakamoto, H. Murakami, N. Kawahara, J. Oda, and K. Tomita,
    "Mechanical evaluation by patient-specific finite elementanalyses demonstrates therapeutic effects for osteoporotic vertebrae"
    Journal of the Mechanical Behavior of Biomedical Materials 3 pp.31-40 (2010).

  6. K. O. Okeyo, T. Adachi, and M. Hojo,
    "Mechanical regulation of actin network dynamics in migrating cells"
    Journal of Biomechanical Science and Engineering 5(3) pp.186-207 (2010).

  7. S. Matsushita, T. Adachi, Y. Inoue, M. Hojo, and M. Sokabe,
    "Evaluation of Extensional and Torsional Stiffness of Single ActinFilaments by Molecular Dynamics Analysis"
    Journal of Biomechanics 43(16) pp.3162-3167 (2010).

  8. H. Miyoshi, J. Ju, S. Lee, D. Cho, J. Ko, Y. Yamagata, and T. Adachi,
    "Control of highly migratory cells by microstructured surfacebased on transient change in cell behavior"
    Biomaterials 31(33) pp.8539-8545 (2010).

  9. Y. Kameo, T. Adachi, N. Sato, and M. Hojo,
    "Estimation of bone permeability considering the morphology of lacuno-canalicularporosity"
    Journal of the Mechanical Behavior of Biomedical Materials 3(3) pp.240-248 (2010).

  10. Y. Inoue, T. Deji, Y. Shimada, M. Hojo, and T. Adachi,
    "Simulations of dynamics of actin filaments by remodeling them in shearflows"
    Computers in Biology and Medicine 40(11-12) pp.876-882 (2010).

  11. T. Adachi, Y. Kameo, and M. Hojo,
    "Trabecular bone remodelling simulation considering osteocytic response to fluid-induced shearstress"
    Philosophical Transactions of the Royal Society A 368 pp.2669-2682 (2010).

  12. K. Tsubota, Y. Suzuki, T. Yamada, M. Hojo, A. Makinouchi, and T. Adachi,
    "Computer simulation of trabecular remodeling in humanproximal femur using large-scale voxel FE models: Approach to understanding Wolff’s law"
    Journal of Biomechanics 42(8) pp.1088-1094 (2009).

  13. Y. Shimada, T. Adachi, Y. Inoue, and M. Hojo,
    "Coarse-grained modeling and simulation of actin filament behavior based on Browniandynamics method"
    Molecular and Cellular Biomechanics 6(3) pp.161-173 (2009).

  14. K. O. Okeyo, T. Adachi, and M. Hojo,
    "Dynamic coupling between actin network flow and turnover revealed by flow mapping in thelamella of crawling fragments"
    Biochemical and Biophysical Research Communications 390 pp.797-802 (2009).

  15. K. O. Okeyo, T. Adachi, J. Sunaga, and M. Hojo,
    "Actomyosin contractility spatiotemporally regulates actin network dynamics inmigrating cells"
    Journal of Biomechanics 42(15) pp.2540-2548 (2009).

  16. Y. Kameo, T. Adachi, and M. Hojo,
    "Fluid pressure response in poroelastic materials subjected to cyclic loading"
    Journal of the Mechanics and Physics of Solids 57(11) pp.1815-1827 (2009).

  17. T. Adachi, Y. Aonuma, K. Taira, M. Hojo, and H. Kamioka,
    "Asymmetric intercellular communication between bone cells: Propagationof the calcium signaling"
    Biochemical and Biophysical Research Communications 389 pp.495-500 (2009).

  18. T. Adachi, Y. Aonuma, S. Ito, M. Tanaka, M. Hojo, T. Takano-Yamamoto, and H. Kamioka,
    "Osteocyte calcium signaling response tobone matrix deformation"
    Journal of Biomechanics 42(15) pp.2507-2512 (2009).

  19. T. Adachi, Y. Aonuma, M. Tanaka, M. Hojo, T. Takano-Yamamoto, and H. Kamioka,
    "Calcium response in single osteocytes to locallyapplied mechanical stimulus: Differences in cell process and cell body"
    Journal of Biomechanics 42(12) pp.1989-1995 (2009).

  20. T. Adachi, K.O. Okeyo, Y. Shitagawa, and M. Hojo,
    "Strain Field in Actin Filament Network in Lamellipodia of Migrating Cells:Implication for Network Reorganization"
    Journal of Biomechanics 42(3) pp.297-302 (2009).

  21. Y. He, H. Liu, R. Himeno, J. Sunaga, N. Kakusho, and H. Yokota,
    "Finite element analysis of blood flow and heat transfer in animage-based human finger"
    Comput. Biol. Med. 38(5) pp.555-562 (2008).

  22. Y. Kameo, T. Adachi, and M. Hojo,
    "Transient Response of Fluid Pressure in a Poroelastic Material under Uniaxial Cyclic Loading"
    Journal of the Mechanics and Physics of Solids 56(5) pp.1794-1805 (2008).

  23. Y. Inoue, S. Takagi, and Y. Matsumoto,
    "A simulation model for amphiphilic molecules in a mesoscale solvent"
    Computers and Mathematics with Applications 55(7) pp.1469-1480 (2008).

  24. T. Adachi, K. Sato, N. Higashi, Y. Tomita, and M. Hojo,
    "Simultaneous observation of calcium signaling response and membranedeformation due to localized mechanical stimulus in single osteoblast-like cells"
    Journal of the Mechanical Behavior of Biomedical Materials 1(1) pp.43-50 (2008).

  25. K. Sato, T. Adachi, D. Ueda, M. Hojo, and Y. Tomita,
    "Measurement of local strain on cell membrane at initiation point of calciumsignaling response to applied mechanical stimulus in osteoblastic cell"
    Journal of Biomechanics 40(6) pp.1246-1255 (2007).

  26. K. Sato, T. Adachi, Y. Shirai, N. Saito, and Y. Tomita,
    "Local disassembly of actin stress fibers induced by selected release ofintracellular tension in osteoblastic cell"
    Journal of Biomechanical Science and Engineering 1(1) pp.204-214 (2006).

  27. K. Tsubota and T. Adachi,
    "Computer simulation study on local and integral mechanical quantities at single trabecular level ascandidates of remodeling stimuli"
    Journal of Biomechanical Science and Engineering 1(1) pp.124-135 (2006).

  28. T. Adachi, Y. Osako, M. Tanaka, M. Hojo, and S. J. Hollister,
    "Framework for optimal design of porous scaffold microstructure bycomputational simulation of bone regeneration"
    Biomaterials 27(21) pp.3964-3972 (2006).

VCAD System Support Team
  1. M. Takamura, A. Fukui, T. Hama, Y. Miyoshi, M. Sakata, H. Sunaga, A. Makinouchi, and M. Asakawa,
    "Twisting in curved hatchannel products made of high strength steel sheet"
    Steel Research International 81(9) pp.821-824 (2010).

  2. M. Takamura, M. Sakata, A. Fukui, T. Hama, Y. Miyoshi, H. Sunaga, A. Makinouchi, and M. Asakawa,
    "Investigation of twist incurved hat channel products by elastic-plastic finite element analysis"
    International Journal of Material Forming 3 pp.131-134 (2010).

  3. T. Moriya, M. Takamura, and S. Takahashi,
    "Development of total stamping simulation system for evaluating formability of sheetmetal forming of sheet metal forming parts"
    Review of Automotive Engineering 30 pp.449-456 (2009).